Tumor and Cell Line Expression Analyses Figures
Neekesh Dharia & Guillaume Kugener
2020-09-28
Generated using: 20Q1
Overview
- Co-clustering cell lines and tumors in expression space using Celligner. https://www.biorxiv.org/content/10.1101/2020.03.25.008342v1
Pediatric tumor types with CL data
Pediatric tumor types with CL or tumor data
The plot below all cell lines embedded
Prior to cellinger
The plot below is the output without using cellinger using UMAP
Undifferentiated cluster
Assigned tumor types to cell lines and confidence metrics
Session Info
devtools::session_info()## ─ Session info ───────────────────────────────────────────────────────────────
## setting value
## version R version 3.6.2 (2019-12-12)
## os macOS Catalina 10.15.6
## system x86_64, darwin15.6.0
## ui X11
## language (EN)
## collate en_US.UTF-8
## ctype en_US.UTF-8
## tz America/New_York
## date 2020-09-28
##
## ─ Packages ───────────────────────────────────────────────────────────────────
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##
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